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Typically pulls are done in the ~1:1 ratio [not including final drive ratio]. Thus, MINI pulls are done in 4th gear. Pulls done in 3rd will usually result in a lower torque measurement. The most important thing is the before and after dyno pulls are done on the same dyno in the same gear with the same engine temps [coolant & intake] to get the dyno itself as transparent as possible in the delta. Comparing dyno graphs between cars on different dynos, even the same brand dyno, is virtually moot except for bragging rights and entertainment.
You want to use the gear that is closest to a 1:1 ratio....that is 4th.
x2, the idea is that you need to have as close to a "direct drive" ratio gear as you can which is fourth, b/c if you run it in fifth or third or even second itll mess with your numbers crazily